RetrogeneDB ID: | retro_cfam_437 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:73019889..73020425(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003544 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 92.78 % |
Parental protein coverage: | 94.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK |
L.SS.IRVHPTPAAS.MPPKFDPNEIKVVYLRCT.GEVGA.SALAPKIGPLGLSPKKVGDDIAKATGDWK | |
Retrocopy | LWSS*IRVHPTPAASTMPPKFDPNEIKVVYLRCTSGEVGAMSALAPKIGPLGLSPKKVGDDIAKATGDWK |
Parental | GLRITVKLTIQNRQAQIEVVPSASALIIKALKE-PPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR |
GLRITVKLTIQ.RQAQIEVVPSA.ALIIKALKE...RDRKKQKNI.HSGNITFDEIVNI.RQMRHRSLAR | |
Retrocopy | GLRITVKLTIQSRQAQIEVVPSAFALIIKALKE<TSRDRKKQKNIEHSGNITFDEIVNIDRQMRHRSLAR |
Parental | ELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP |
ELSGTIKEILGTAQSVGCNVDG.HPHDIIDDINSGAVECP | |
Retrocopy | ELSGTIKEILGTAQSVGCNVDGHHPHDIIDDINSGAVECP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 305 .54 RPM |
SRP017611_brain | 0 .08 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .26 RPM | 791 .32 RPM |
SRP017611_liver | 0 .07 RPM | 227 .18 RPM |