RetrogeneDB ID: | retro_cpor_1373 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_75:2802150..2802614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.75 % |
Parental protein coverage: | 81.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FRLSARRRQRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKK |
FRLSARRRQRCNFL..SRIRVH.TPAAST.PPKFDPNEIKVVYLRCT.GEVGATSALAP....LGLSPKK | |
Retrocopy | FRLSARRRQRCNFLWLSRIRVHRTPAASTTPPKFDPNEIKVVYLRCTSGEVGATSALAP----LGLSPKK |
Parental | VGDDIAKATGDWKGLRITVKLTIQNRQAQI-EVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIV |
VGDDI.K.TGDWKGLRITVKLTIQNRQAQ..EVVPSASALIIKALKEPPRDRKKQKNIKHSGN.TF.EIV | |
Retrocopy | VGDDITKTTGDWKGLRITVKLTIQNRQAQL<EVVPSASALIIKALKEPPRDRKKQKNIKHSGNTTFGEIV |
Parental | NIARQMRHRSLARELSGTIK |
NI..QMRH.SLARELSGTIK | |
Retrocopy | NIVQQMRHWSLARELSGTIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .21 RPM | 202 .78 RPM |
SRP017611_liver | 0 .09 RPM | 146 .95 RPM |
SRP040447_lung | 0 .03 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |