RetrogeneDB ID: | retro_cfam_728 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:23337318..23337845(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 71.27 % |
Parental protein coverage: | 93.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKV-GDDIAKATGDWKGL |
S.....PTPAAS.MPPKF.PNEIKV.YLRCT..E.GA.SALA.KI.PLGLS......DDI.KAT.DW.GL | |
Retrocopy | SSVHPTPTPAASSMPPKFNPNEIKVMYLRCTSSEAGAKSALALKISPLGLSXXXX<XDDITKATSDWEGL |
Parental | RITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELS |
.ITVKLTIQNRQAQIE..PSAS.LIIKALKEPPR.RKKQKNIKHSGN.TF.EI.NIARQM...SLARE.S | |
Retrocopy | QITVKLTIQNRQAQIELLPSASVLIIKALKEPPRNRKKQKNIKHSGNVTFAEIANIARQMLQ*SLAREFS |
Parental | GTIKEI-LGTAQ-SVGCNVD-GRHPHDIIDDINSGAVECPA |
.T.K...L.TAQ..VG.NV..G.HP.DI.DDINS.A.EC.A | |
Retrocopy | RTFKDV<LATAQ<AVGYNVE<GCHPQDITDDINSSAMECLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |