RetrogeneDB ID: | retro_cfam_759 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:33966008..33966351(+) | ||
Located in intron of: | ENSCAFG00000032040 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 56.67 % |
Parental protein coverage: | 62.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RSSRIRVHPTPAASAMPPKFDPNEIKVVYLRC-TGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK |
R.S.I..H.TPA.S.MPPKF.PN.IKV..LR..T.GEV.A.SA.A.KIGPL.LSPKK..DDI.KA.GDWK | |
Retrocopy | RLSQIQIHLTPAISTMPPKFNPNKIKVIDLRA<TSGEVIAMSAPASKIGPLSLSPKKANDDITKAIGDWK |
Parental | -GLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGN |
.GL.ITVKLTI.NR.AQ.E.VP....L....L..PP.............N | |
Retrocopy | <GLKITVKLTIKNR*AQNEMVP---FLLLP*LSKPPKNSQETERSRKTLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |