RetrogeneDB - Parental gene ENSCAFG00000020136 details

                            
>ENSCAFG00000020136
GCTCGGAGGAGGCAAAGGTGCAACTGTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCTGCCTCCGCCATGCC

GCCTAAGTTCGACCCCAACGAGATCAAAGTCGTGTACCTGAGGTGCACCGGTGGCGAGGTCGGTGCCACGTCTGCCCTGG

CCCCGAAGATCGGCCCGCTGGGTCTGTCTCCAAAAAAGGTTGGTGATGACATCGCCAAGGCAACCGGTGATTGGAAGGGT

CTAAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAAGTGGTACCTTCTGCCTCTGCCCTGATTAT

CAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAATATCACTTTTGATGAGA

TTGTCAATATTGCCCGACAGATGCGACACCGATCTTTAGCCAGAGAACTTTCTGGAACCATTAAAGAGATCCTGGGGACT

GCCCAGTCTGTGGGCTGCAATGTTGATGGCCGTCACCCTCATGACATCATAGATGACATCAATAGTGGTGCAGTGGAATG

CCCAGCGGTG

Library	Parental gene expression (RPM)
SRP012049_cerebellum	305 .54 RPM
SRP017611_brain	91 .54 RPM
SRP017611_kidney	791 .32 RPM
SRP017611_liver	227 .18 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016712	ortholog_one2one	15 retrogenes	retro_amel_1131, retro_amel_1172, retro_amel_1208, retro_amel_1400, retro_amel_1508, retro_amel_1558, retro_amel_17, retro_amel_174, retro_amel_1856, retro_amel_203, retro_amel_260, retro_amel_293, retro_amel_688, retro_amel_876, retro_amel_952,
Cavia porcellus	ENSCPOG00000013769	ortholog_one2one	18 retrogenes	retro_cpor_1, retro_cpor_1069, retro_cpor_1108, retro_cpor_1373, retro_cpor_140, retro_cpor_1473, retro_cpor_1510, retro_cpor_1513, retro_cpor_1514, retro_cpor_313, retro_cpor_342, retro_cpor_553, retro_cpor_556, retro_cpor_664, retro_cpor_874, retro_cpor_910, retro_cpor_921, retro_cpor_954,
Equus caballus	ENSECAG00000010622	ortholog_one2many	17 retrogenes	retro_ecab_1024, retro_ecab_1027, retro_ecab_1119, retro_ecab_157, retro_ecab_335, retro_ecab_379, retro_ecab_457, retro_ecab_475, retro_ecab_605, retro_ecab_666, retro_ecab_679, retro_ecab_699, retro_ecab_708, retro_ecab_843, retro_ecab_895, retro_ecab_967, retro_ecab_973,
Echinops telfairi	ENSETEG00000006941	ortholog_one2one	7 retrogenes	retro_etel_1508, retro_etel_1714, retro_etel_318, retro_etel_345, retro_etel_750, retro_etel_919, retro_etel_983,
Felis catus	ENSFCAG00000010302	ortholog_one2one	31 retrogenes	retro_fcat_1078, retro_fcat_1115, retro_fcat_1118, retro_fcat_1149, retro_fcat_1206, retro_fcat_1276, retro_fcat_1288, retro_fcat_1298, retro_fcat_1376, retro_fcat_1482, retro_fcat_1527, retro_fcat_1637, retro_fcat_1638, retro_fcat_1676, retro_fcat_1854, retro_fcat_1873, retro_fcat_1977, retro_fcat_2009, retro_fcat_302, retro_fcat_35, retro_fcat_352, retro_fcat_359, retro_fcat_415, retro_fcat_455, retro_fcat_502, retro_fcat_509, retro_fcat_53, retro_fcat_638, retro_fcat_767, retro_fcat_819, retro_fcat_902,
Latimeria chalumnae	ENSLACG00000015373	ortholog_one2many	3 retrogenes	retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii	ENSMEUG00000007380	possible_ortholog	12 retrogenes	retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Myotis lucifugus	ENSMLUG00000009551	ortholog_one2one	2 retrogenes	retro_mluc_1222, retro_mluc_1797,
Myotis lucifugus	ENSMLUG00000013404	possible_ortholog	1 retrogene	retro_mluc_14,
Monodelphis domestica	ENSMODG00000004571	possible_ortholog	9 retrogenes	retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mustela putorius furo	ENSMPUG00000013832	ortholog_one2one	34 retrogenes	retro_mputfur_1102, retro_mputfur_1104, retro_mputfur_1137, retro_mputfur_1192, retro_mputfur_1223, retro_mputfur_1283, retro_mputfur_1329, retro_mputfur_1467, retro_mputfur_1526, retro_mputfur_1580, retro_mputfur_260, retro_mputfur_331, retro_mputfur_363, retro_mputfur_445, retro_mputfur_489, retro_mputfur_500, retro_mputfur_508, retro_mputfur_521, retro_mputfur_533, retro_mputfur_534, retro_mputfur_544, retro_mputfur_559, retro_mputfur_594, retro_mputfur_61, retro_mputfur_622, retro_mputfur_632, retro_mputfur_651, retro_mputfur_824, retro_mputfur_828, retro_mputfur_843, retro_mputfur_868, retro_mputfur_884, retro_mputfur_913, retro_mputfur_977,
Otolemur garnettii	ENSOGAG00000000597	possible_ortholog	120 retrogenes	retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Rattus norvegicus	ENSRNOG00000016220	possible_ortholog	4 retrogenes	retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii	ENSSHAG00000017864	possible_ortholog	8 retrogenes	retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,
Ictidomys tridecemlineatus	ENSSTOG00000027425	ortholog_one2one	7 retrogenes	retro_itri_1128, retro_itri_1197, retro_itri_1498, retro_itri_445, retro_itri_790, retro_itri_833, retro_itri_840,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_76	93.94	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_437	92.78	94.21	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_588	93.33	63.16	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_706	68.02	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_728	71.27	93.16	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_748	77.68	66.06	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_759	56.67	62.11	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cfam_850	70.37	80.61	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cfam_950	73.02	98.95	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cfam_955	72.82	60.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cfam_1016	73.30	99.47	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cfam_1139	77.70	83.64	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cfam_1141	73.30	90.53	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cfam_1143	57.14	60.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cfam_1151	57.60	64.21	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cfam_1166	76.67	93.68	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cfam_1181	65.80	99.47	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cfam_1203	54.20	66.84	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_cfam_1257	57.06	91.58	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_cfam_1470	76.83	97.58	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_cfam_1484	68.00	90.53	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_cfam_1558	69.13	78.42	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_cfam_1591	70.62	99.47	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_cfam_1597	76.96	98.95	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_cfam_1632	67.37	98.42	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_cfam_1796	63.38	72.63	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_cfam_1880	66.85	95.26	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_cfam_1986	70.19	62.42	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_cfam_2009	66.67	96.84	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_cfam_2094	73.26	98.42	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_cfam_2194	68.31	74.74	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000020136 retrocopies

Parental gene:	RPL12, ENSCAFG00000020136
Aliases:	None
Description:	60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58]
Organism:	*Dog (Canis familiaris)*
Coordinates:	9:55894949..55898774(+)

Parental gene:

RPL12, ENSCAFG00000020136