RetrogeneDB ID: | retro_itri_1197 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393398.1:2599360..2599738(-) | ||
Located in intron of: | ENSSTOG00000007383 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 97.62 % |
Parental protein coverage: | 76.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE |
PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE | |
Retrocopy | PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE |
Parental | IVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
IVNIARQMRH.SLAREL.GTIKEILGTAQSVGCN.DGRHPHDIIDDINSGAVECPA | |
Retrocopy | IVNIARQMRHQSLARELFGTIKEILGTAQSVGCNIDGRHPHDIIDDINSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |