RetrogeneDB ID: | retro_cfam_1016 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:29472194..29472761(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 73.3 % |
Parental protein coverage: | 99.47 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ARRRQRCNCLRSSRIRVHPTPAASAMPP-KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGD |
A.RR.R.NCL.SS.I.V..TP..S.MPP..FDPNEIKV.YL.C..G.VGATSALA.KIG.LGLS.K.VGD | |
Retrocopy | AWRR*RYNCLWSSQIQVYQTPSTSTMPP>RFDPNEIKVIYLECNSGKVGATSALALKIGLLGLSSKTVGD |
Parental | DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIAR |
DIAKAT.D.KGLRITVKLTIQNR.AQI.V.PSAS.LII.ALKE.P.DR.K.KNI.H.GNIT.DE.VNIA. | |
Retrocopy | DIAKATED*KGLRITVKLTIQNREAQIRVMPSASVLIITALKESPTDRMKWKNI*HCGNITVDEFVNIAQ |
Parental | QMRHRSLARELSGTIKEILGTAQSVGCNVDGRH-PHDIIDDINSGAVECPA |
QM.H..LA.E.SGTIKEIL.TAQSVG.NVDG.H.P..IID.INSG.VECPA | |
Retrocopy | QMWH*FLATEFSGTIKEILETAQSVGSNVDGYH<PCNIIDHINSGTVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |