RetrogeneDB ID: | retro_cpor_1473 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:35258554..35259085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.06 % |
Parental protein coverage: | 90.77 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 4 |
Parental | AFRLSARRRQRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLS-P |
.F.L.ARRR.RC.FL.SS.I.V..T.AASTMPPK..P.EIKV..LRCT.GE..ATS.LA..I..LGLS.. | |
Retrocopy | SFWL*ARRRLRCSFLQSSQI*VYSTSAASTMPPKLNPSEIKVMHLRCTSGEISATSSLASTICLLGLS>X |
Parental | KKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE-VVPSASALIIKALKEPPR-DRKKQKNIKHSGNITFD |
..VGD.I.KAT.DW.GL.ITVKLTIQ.RQA.I...VPSASALIIKALK..PR...KKQ.NIKH.GNITFD | |
Retrocopy | XXVGDNITKATSDWEGLKITVKLTIQKRQA*IG<GVPSASALIIKALKGLPR>KFKKQTNIKHGGNITFD |
Parental | EIVNIARQMRH-RSLARELSGTIKEILGTAQSVGCNVDNRH |
EI.NIA.Q..H..SLAR.L.G.IKEI.GTAQSVGCNVDN.H | |
Retrocopy | EILNIA*QT*H<QSLAR*LFGIIKEIQGTAQSVGCNVDNWH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .00 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |