RetrogeneDB ID: | retro_cfam_1203 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 26:5022107..5022486(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 54.2 % |
Parental protein coverage: | 66.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTG-GEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDW |
RSS....H......A.PP.......KV..LR.TG.G.....SALAPKIGP..LSP...GDDI...T.G.W | |
Retrocopy | RSSSLTTHIHRWLKAWPPSY--SFFKVLPLRYTG>GKINVMSALAPKIGPQSLSPVRLGDDITNTTDGEW |
Parental | KGLRITVKLTIQN-RQAQIEVVPSASALIIKALKE-PPRDRKKQKNIKHSGNITFDEIVNI |
KGLR..V.L.IQN.RQA....VPSAS...I......PPR.RKKQKNI..SG.ITF.EIVNI | |
Retrocopy | KGLRVMVSLSIQN>RQAHTDAVPSASTQVINIFRD<PPRERKKQKNIRYSGSITFNEIVNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .20 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |