RetrogeneDB ID: | retro_cpor_556 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_19:29039000..29039578(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000012564 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.69 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FRLSARRRQRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKK |
F.LS.RRR.RCNFL.SSRIRVH.TPAASTM.PKF.PNEIKVVYLR.TGGEVGAT.ALAPKIGPLGLSP.K | |
Retrocopy | FQLSVRRRLRCNFLGSSRIRVHLTPAASTMLPKFNPNEIKVVYLRRTGGEVGATPALAPKIGPLGLSPQK |
Parental | VGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN-IKHSGNITFDEIV |
VGDDI.KATGDWKGLRITVKLTIQNRQ.QIEVVPSASALIIKALKEPPRDRKKQKN..KHS.NITFDEIV | |
Retrocopy | VGDDITKATGDWKGLRITVKLTIQNRQVQIEVVPSASALIIKALKEPPRDRKKQKN<LKHSENITFDEIV |
Parental | NIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINSGAVECPA |
N.A.QMRH.SLARELSGTIKEIL.TAQSVGCNVDNRHPHDIIDDINSGAVEC.A | |
Retrocopy | NTAQQMRHWSLARELSGTIKEILVTAQSVGCNVDNRHPHDIIDDINSGAVECLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .00 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |