RetrogeneDB ID: | retro_cfam_1257 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 28:3056636..3057157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 57.06 % |
Parental protein coverage: | 91.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPL-GLSPKKVGDDI |
RR...NC..SS.I.VH.T.AAS.M.P..DPN.I.VVYL.CT...V.ATSAL.PK..P....S...VGD.I | |
Retrocopy | RRCKYNCSQSSQIQVHAT*AASTMQPRLDPNKIEVVYLKCTSQAVSATSALDPKSAPW>SVSXXXVGDSI |
Parental | AKA-TGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNI-AR |
AKA.T.DWKGLR.TVKL.IQNRQAQ.E.VPSASAL.....K............K............I.A. | |
Retrocopy | AKA>TSDWKGLRMTVKLIIQNRQAQTELVPSASALTLS--KSSGNHQETERSRKTFSTVEIPLSIRIIA* |
Parental | QMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI |
QM.H.SLARELSGTIKEILGTAQS..C.VD..HPH.I | |
Retrocopy | QMWH*SLARELSGTIKEILGTAQSLSCQVDSHHPHGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |