RetrogeneDB ID: | retro_ecab_895 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:7853717..7854149(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.55 % |
Parental protein coverage: | 88.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | GEVGATSALAPKIGPLGLSP-KKVGDDIAK-ATGDWKGLRITVKLTIQNRQAQIEVVPSASALII-KALK |
G.VG..SAL.PKIGPLGLSP..K.GDDIAK.ATGDWKGLR.TVKLTIQ.RQAQ.EVVPSAS.LII.K... | |
Retrocopy | GGVGSMSALPPKIGPLGLSP<IKAGDDIAK<ATGDWKGLRVTVKLTIQKRQAQNEVVPSASVLII>KGSR |
Parental | EPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILG-TAQSVGCNVDGRHPHDVIDDI |
.........K........TFDE.VNIA.Q..H.S..RELSGT.KEILG.TAQSVGC.VDG.HPHD.IDDI | |
Retrocopy | KRQETERSRKTLS-TVETTFDETVNIA*QTQHPSIPRELSGTSKEILG<TAQSVGCHVDGCHPHDIIDDI |
Parental | NNGAV-ECPAS |
...AV.ECPAS | |
Retrocopy | DSDAV<ECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .08 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |