RetrogeneDB ID: | retro_itri_1527 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393526.1:909075..909459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000023908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.63 % |
Parental protein coverage: | 65.5 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | KKNPEVPVNFAEFSKKCSE-RWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP |
..NPEV..N..EFSKKC...RWKT.SG..K.K.DE...ADKV..D..MK.YG.AKG.KK.K..N.P...P | |
Retrocopy | RENPEVHNNITEFSKKCPT<RWKTVSGIKKLKSDEKKRADKVFCD**MKAYGLAKGNKKRKEQNVPRSLP |
Parental | SGFFLFCSEFRP-KIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVAD |
SGFFL...E..P.K.K.TN.........KKLGEMW.NL....K..YITK...LK..Y..DV.D | |
Retrocopy | SGFFLL--EIPP>KFKYTNLEFLLKALQKKLGEMWSNLT-G*K*LYITKVEMLKKRY*RDVDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |