RetrogeneDB ID: | retro_itri_1655 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393611.1:104553..105015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000023908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.08 % |
Parental protein coverage: | 78.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFF |
PEVPVN..EFSK..SERWKTMSGKEKSKF.EMAK.DKV.Y.REMKD..PAKGGKKKKD..A.KRPPSGFF | |
Retrocopy | PEVPVNVVEFSK*YSERWKTMSGKEKSKFYEMAKVDKVCYNREMKDHEPAKGGKKKKDSKASKRPPSGFF |
Parental | LFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGTKG |
LFCSEFRPKIKSTNPGISIGDV.KKLGEMWNN...SEKQPYITKAAKLKEKY..DVADYKSKGKFDG.KG | |
Retrocopy | LFCSEFRPKIKSTNPGISIGDVSKKLGEMWNN---SEKQPYITKAAKLKEKYKMDVADYKSKGKFDGSKG |
Parental | PAKVARKKVEEEDEEEE |
PAKVA.KKV.EE..E.E | |
Retrocopy | PAKVAWKKV*EEEKEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |