RetrogeneDB ID: | retro_mmus_2816 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:41306401..41306747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42 | ||
Ensembl ID: | ENSMUSG00000006699 | ||
Aliases: | Cdc42, AI747189, AU018915 | ||
Description: | cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211] |
Percent Identity: | 73.28 % |
Parental protein coverage: | 59.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VVGDGAVGKTCLLISYTTNKFPSEYVPT--VFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT |
VV.D.AV.KTCL.ISY..NKFP..YVP...V.DNY.VT.MIG.EPYTLGLFDT.GQEDYDRL...SYPQT | |
Retrocopy | VVSDDAVDKTCLVISYSVNKFP*KYVPVPAVLDNYGVTLMIGREPYTLGLFDTLGQEDYDRL*LVSYPQT |
Parental | DVFL-VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR |
.VF......V.SPSSFENV.EKWVPEI.HHCPKTPFLLVGTQ..LR | |
Retrocopy | TVFF>SMILVTSPSSFENVNEKWVPEIIHHCPKTPFLLVGTQMGLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 215 .97 RPM |
SRP007412_cerebellum | 0 .00 RPM | 169 .26 RPM |
SRP007412_heart | 0 .00 RPM | 99 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .91 RPM |
SRP007412_liver | 0 .00 RPM | 103 .20 RPM |
SRP007412_testis | 0 .00 RPM | 39 .11 RPM |