RetrogeneDB ID: | retro_pcap_276 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_256015:1..341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPCAG00000010377 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 62.93 % |
Parental protein coverage: | 61.54 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | KNFAKYFL-HQSHEER-EHAEKLMKLQNQRGGRIFLNDIKKP-DRDDWESGLNAMECALFLEKNVNQSLL |
KNF...FL.HQ.HEER..H.EKL.KLQNQ..G..FL..IKKP.D.D....GLNA..C.L.L.KNVNQS.L | |
Retrocopy | KNFDQPFL>HQFHEER>KHIEKLTKLQNQQVG*NFLQKIKKP>DYDNGKAGLNATQCTLYL*KNVNQSIL |
Parental | DLHKLATEKNDPHLCDFIETHYLDEQVK-SIKQLGDYVTNLRKMGA |
..HKL.T.KN.P.LCDF.E.HYL..QVK.S.K.LGDYVTN..K.GA | |
Retrocopy | EPHKLVTDKNHPYLCDFTESHYLS*QVK>SAKELGDYVTNW*KIGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |