RetrogeneDB ID: | retro_mmus_2856 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:94848391..94848769(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSMUSG00000024661 | ||
Aliases: | Fth1, FHC, Fth, HFt, MFH | ||
Description: | ferritin heavy chain 1 [Source:MGI Symbol;Acc:MGI:95588] |
Percent Identity: | 56.3 % |
Parental protein coverage: | 72.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | VALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR-IFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSL |
..LKNFAKY.LH..HE...HAEKL.KL..Q..G..IF.Q.......D.WE.GL...EC.LHLE..V..SL | |
Retrocopy | LTLKNFAKYLLHKFHEQKRHAEKLIKL*HQPDGQ<IFPQNFQ----DVWECGLSKRECVLHLERRVTLSL |
Parental | LELHKLATDKNDPH-LCDFIETYYLSEQVKSIKELGDHVTNLRKMGA-PEAGMAEYLFDKHTLGH |
LELH.LAT.KNDP..L.DF..T.Y.....KSIKELG...TNL.K.GA.P..GM.E.L.D.HTL.H | |
Retrocopy | LELHTLATEKNDPS<LGDFTVTPYPNQLEKSIKELGELITNLPKRGA<PRPGM-ESLLDRHTLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1220 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1340 .29 RPM |
SRP007412_heart | 0 .00 RPM | 1076 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 2397 .51 RPM |
SRP007412_liver | 0 .00 RPM | 1186 .06 RPM |
SRP007412_testis | 0 .00 RPM | 144 .99 RPM |