RetrogeneDB ID: | retro_rnor_71 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:53804779..53805328(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000003783 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSRNOG00000022619 | ||
Aliases: | Fth1, Fth | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_036980] |
Percent Identity: | 50.29 % |
Parental protein coverage: | 95.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKL |
AS.SQ..Q.Y...S.AA.N.QI.L.LY.SY.YLSM........VAL..FA..FL.QS.......E.L..L | |
Retrocopy | ASVSQMEQTYLSESNAALNSQIQLQLYGSYIYLSMASFCNQEEVALGSFALFFLRQSQKWMGRTEMLFSL |
Parental | QNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQV |
...R.G...L..I...DR.DW..GL.AMECA.HLEK..NQSLL.L..LA..K.D..LC.F...H.L..QV | |
Retrocopy | LTERQGSLTLGRIASQDRQDWLDGLMAMECAFHLEKTLNQSLLQLYNLANSKGDLYLCNFLKSHFLPQQV |
Parental | KSIKELGDHVTNLRKMGAPESGMAEYLFDKHTL |
...KE.G...TNLR.MGAPE...AE.LFD..T. | |
Retrocopy | EILKEMGGYMTNLRRMGAPENRNAEKLFDQLTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 763 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 1743 .16 RPM |
SRP017611_liver | 0 .00 RPM | 782 .04 RPM |