RetrogeneDB ID: | retro_rnor_264 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:46510485..46511199(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000014988 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSRNOG00000022619 | ||
Aliases: | Fth1, Fth | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_036980] |
Percent Identity: | 80.57 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMK |
...P..VRQN.H.DSEAAINRQIN.ELYASYVYLSM..YF.RDDVAL.NF.KYFL.QS.EEREHAEKLM. | |
Retrocopy | STGPARVRQNFHPDSEAAINRQINMELYASYVYLSMAYYFSRDDVALYNFSKYFLRQSLEEREHAEKLMR |
Parental | LQNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQ |
LQNQRGGRI.LQDIKKPD.DDWE.GL.AMECAL.LEKSVNQSLL.LH.LA..K.DPHLCDF.ETHYL.EQ | |
Retrocopy | LQNQRGGRICLQDIKKPDKDDWECGLRAMECALLLEKSVNQSLLDLHTLASEKGDPHLCDFLETHYLHEQ |
Parental | VKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLG |
VKSIKELGDHV.NL..MGAP..G.AEYLFDKHTLG | |
Retrocopy | VKSIKELGDHVHNLVTMGAPAAGLAEYLFDKHTLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 763 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 1743 .16 RPM |
SRP017611_liver | 0 .00 RPM | 782 .04 RPM |