RetrogeneDB ID: | retro_rnor_1197 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:65466371..65466758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSRNOG00000022619 | ||
Aliases: | Fth1, Fth | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_036980] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YLSMSCYFDRDDVALKNFAKYFLHQSHEE-REHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMEC |
Y.S....F..DD.ALKN.AKY.L.Q...E..E.A.KL.K.Q.QR..R..LQ...K....D.ES.LNA.EC | |
Retrocopy | YPSIYSCFNLDDQALKNCAKYCLNQLD*E>DEYAKKLSKPQHQR*-RPNLQYEIKTGNNDRESSLNALEC |
Parental | ALHLEKSVNQSLLELHKLATDKNDP-HLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPES |
AL.LEKS....LLEL..LA.D.N.P.H..DF.ET..LN.QVKSIKE..D..TN..KMGA..S | |
Retrocopy | ALYLEKSGYHPLLELLRLASDQNGP<HASDFSETLFLNKQVKSIKEMDDPQTNSHKMGASYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 763 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 1743 .16 RPM |
SRP017611_liver | 0 .00 RPM | 782 .04 RPM |