RetrogeneDB - Parental gene ENSPCAG00000010377 details

                            
>ENSPCAG00000010377
ATGACGACCACGTTCCCCTCGCAGGTGCGCCAGAACTACAGTCAGGACTCGGAGGCCGCCATCAACCGCCAGATCAACCT

GGAGCTCTACGCCTCCTATGTTTACCTGTCCATGTCTTACTACTTCGACCGCGACGATGTGGCTCTGAAGAATTTTGCCA

AATACTTTCTTCATCAGTCCCATGAGGAGAGGGAACATGCTGAGAAGCTGATGAAGCTGCAGAACCAACGGGGTGGCCGA

ATCTTCCTGAACGATATCAAGAAACCAGACCGTGATGATTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCATTATTCTT

GGAAAAAAACGTGAATCAGTCACTACTGGACCTGCACAAACTGGCCACTGAAAAAAATGACCCTCATTTGTGTGACTTCA

TTGAGACACATTACCTAGATGAGCAGGTGAAATCGATCAAACAGTTGGGTGACTACGTAACCAACTTGCGCAAGATGGGA

GCCCCGGAATCTGGCCTGGCAGAGTACCTCTTTGACAAGCACACCATGGGAGACAGTAATGAAGGCTAA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016831	possible_ortholog	1 retrogene	retro_amel_115,
Canis familiaris	ENSCAFG00000015901	possible_ortholog	1 retrogene	retro_cfam_150,
Callithrix jacchus	ENSCJAG00000019089	ortholog_one2many	16 retrogenes	retro_cjac_1570, retro_cjac_1634, retro_cjac_2115, retro_cjac_2233, retro_cjac_230, retro_cjac_232, retro_cjac_2320, retro_cjac_2531, retro_cjac_278, retro_cjac_2843, retro_cjac_2857, retro_cjac_485, retro_cjac_519, retro_cjac_699, retro_cjac_767, retro_cjac_804,
Cavia porcellus	ENSCPOG00000026586	possible_ortholog	3 retrogenes	retro_cpor_1309, retro_cpor_15, retro_cpor_157,
Dasypus novemcinctus	ENSDNOG00000017128	ortholog_one2many	83 retrogenes	retro_dnov_1017, retro_dnov_1074, retro_dnov_1078, retro_dnov_110, retro_dnov_1179, retro_dnov_1188, retro_dnov_1196, retro_dnov_1201, retro_dnov_1205, retro_dnov_1271, retro_dnov_1352, retro_dnov_1356, retro_dnov_1369, retro_dnov_1397, retro_dnov_1415, retro_dnov_1425, retro_dnov_1446, retro_dnov_1489, retro_dnov_1526, retro_dnov_1535, retro_dnov_1554, retro_dnov_1565, retro_dnov_162, retro_dnov_1627, retro_dnov_1640, retro_dnov_1777, retro_dnov_1787, retro_dnov_1792, retro_dnov_1827, retro_dnov_1851, retro_dnov_1865, retro_dnov_1875, retro_dnov_189, retro_dnov_197, retro_dnov_2005, retro_dnov_2065, retro_dnov_2093, retro_dnov_2097, retro_dnov_2109, retro_dnov_2124, retro_dnov_2136, retro_dnov_2154, retro_dnov_2173, retro_dnov_220, retro_dnov_2216, retro_dnov_2231, retro_dnov_2241, retro_dnov_2251, retro_dnov_2356, retro_dnov_2388, retro_dnov_2399, retro_dnov_242, retro_dnov_2443, retro_dnov_2444, retro_dnov_2454, retro_dnov_2476, retro_dnov_2483, retro_dnov_2489, retro_dnov_2511, retro_dnov_2528, retro_dnov_2554, retro_dnov_2579, retro_dnov_2607, retro_dnov_2626, retro_dnov_2646, retro_dnov_304, retro_dnov_383, retro_dnov_409, retro_dnov_422, retro_dnov_471, retro_dnov_517, retro_dnov_52, retro_dnov_55, retro_dnov_589, retro_dnov_61, retro_dnov_661, retro_dnov_675, retro_dnov_722, retro_dnov_726, retro_dnov_810, retro_dnov_864, retro_dnov_890, retro_dnov_994,
Felis catus	ENSFCAG00000007382	possible_ortholog	1 retrogene	retro_fcat_887,
Homo sapiens	ENSG00000167996	ortholog_one2one	20 retrogenes	retro_hsap_1243, retro_hsap_139, retro_hsap_1432, retro_hsap_2240, retro_hsap_2351, retro_hsap_2662, retro_hsap_2835, retro_hsap_2985, retro_hsap_2996, retro_hsap_316, retro_hsap_3208, retro_hsap_3293, retro_hsap_3589, retro_hsap_4083, retro_hsap_4232, retro_hsap_4671, retro_hsap_484, retro_hsap_81, retro_hsap_87, retro_hsap_898,
Gorilla gorilla	ENSGGOG00000027722	ortholog_one2many	7 retrogenes	retro_ggor_1313, retro_ggor_153, retro_ggor_1671, retro_ggor_1858, retro_ggor_2835, retro_ggor_64, retro_ggor_726,
Latimeria chalumnae	ENSLACG00000017426	ortholog_one2many	1 retrogene	retro_lcha_75,
Loxodonta africana	ENSLAFG00000004824	ortholog_one2many	12 retrogenes	retro_lafr_106, retro_lafr_1080, retro_lafr_1129, retro_lafr_138, retro_lafr_321, retro_lafr_433, retro_lafr_523, retro_lafr_53, retro_lafr_624, retro_lafr_717, retro_lafr_760, retro_lafr_966,
Myotis lucifugus	ENSMLUG00000025726	possible_ortholog	16 retrogenes	retro_mluc_1030, retro_mluc_1142, retro_mluc_1211, retro_mluc_1354, retro_mluc_1464, retro_mluc_1769, retro_mluc_1984, retro_mluc_2002, retro_mluc_2091, retro_mluc_212, retro_mluc_2635, retro_mluc_361, retro_mluc_532, retro_mluc_556, retro_mluc_850, retro_mluc_885,
Monodelphis domestica	ENSMODG00000007582	ortholog_one2many	9 retrogenes	retro_mdom_1134, retro_mdom_122, retro_mdom_1294, retro_mdom_1407, retro_mdom_1742, retro_mdom_300, retro_mdom_564, retro_mdom_643, retro_mdom_809,
Mus musculus	ENSMUSG00000024661	ortholog_one2one	4 retrogenes	retro_mmus_2856, retro_mmus_3417, retro_mmus_3660, retro_mmus_45,
Nomascus leucogenys	ENSNLEG00000003321	ortholog_one2one	29 retrogenes	retro_nleu_1036, retro_nleu_1157, retro_nleu_136, retro_nleu_1411, retro_nleu_1503, retro_nleu_1532, retro_nleu_1732, retro_nleu_1886, retro_nleu_2049, retro_nleu_2143, retro_nleu_2162, retro_nleu_2163, retro_nleu_2281, retro_nleu_2356, retro_nleu_2357, retro_nleu_2358, retro_nleu_2359, retro_nleu_2360, retro_nleu_2361, retro_nleu_2417, retro_nleu_2433, retro_nleu_2962, retro_nleu_303, retro_nleu_383, retro_nleu_72, retro_nleu_738, retro_nleu_747, retro_nleu_78, retro_nleu_936,
Oryctolagus cuniculus	ENSOCUG00000014108	ortholog_one2many	4 retrogenes	retro_ocun_1172, retro_ocun_1179, retro_ocun_1598, retro_ocun_93,
Procavia capensis	ENSPCAG00000013227	other_paralog	6 retrogenes	retro_pcap_120, retro_pcap_156, retro_pcap_258, retro_pcap_376, retro_pcap_384, retro_pcap_85,
Pongo abelii	ENSPPYG00000003173	ortholog_one2many	12 retrogenes	retro_pabe_1034, retro_pabe_1186, retro_pabe_2410, retro_pabe_2483, retro_pabe_2484, retro_pabe_249, retro_pabe_3351, retro_pabe_3406, retro_pabe_35, retro_pabe_3713, retro_pabe_47, retro_pabe_479,
Rattus norvegicus	ENSRNOG00000022619	ortholog_one2one	9 retrogenes	retro_rnor_1197, retro_rnor_1280, retro_rnor_1356, retro_rnor_1832, retro_rnor_2060, retro_rnor_2163, retro_rnor_264, retro_rnor_427, retro_rnor_71,
Sus scrofa	ENSSSCG00000014540	possible_ortholog	9 retrogenes	retro_sscr_1045, retro_sscr_168, retro_sscr_286, retro_sscr_359, retro_sscr_498, retro_sscr_581, retro_sscr_78, retro_sscr_906, retro_sscr_949,
Ictidomys tridecemlineatus	ENSSTOG00000014521	possible_ortholog	1 retrogene	retro_itri_250,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pcap_5	78.65	97.80	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pcap_62	55.56	57.69	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pcap_177	60.31	71.98	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pcap_217	65.44	72.53	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pcap_248	61.33	99.45	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pcap_276	62.93	61.54	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pcap_344	60.67	80.77	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pcap_348	54.78	63.19	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pcap_374	65.31	52.75	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pcap_379	55.56	57.69	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pcap_383	60.42	78.57	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pcap_395	63.84	97.25	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pcap_447	67.42	97.80	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPCAG00000010377 retrocopies

Parental gene:	FTH1, ENSPCAG00000010377
Aliases:	None
Description:	ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976]
Organism:	*Hyrax (Procavia capensis)*
Coordinates:	GeneScaffold_5632:50984..53142(-)

Parental gene:

FTH1, ENSPCAG00000010377