RetrogeneDB ID: | retro_rnor_1356 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:54278557..54278970(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSRNOG00000022619 | ||
Aliases: | Fth1, Fth | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_036980] |
Percent Identity: | 62.94 % |
Parental protein coverage: | 77.47 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | CYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQD-IKKPDRDDWESGLNAMECALHLE |
CYFD.DD.A.KN....F......EREHAEKLM......G..IF.Q...KK.D..D....LN.MEC.LHL. | |
Retrocopy | CYFDQDDLAPKN---FFPANVS*EREHAEKLM-IKC*EGSQIFQQS>LKKSDHGD*GNRLNPMECSLHLK |
Parental | KSVNQSLLELHKLATD-KNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLG |
.SVNQSLLEL.KL.TD.KNDPHLCDF.E.H.LNE..KS.KELGD..TNLRKM..PESGMAE..FDKHTLG | |
Retrocopy | MSVNQSLLELRKLVTD>KNDPHLCDFTENH*LNEHMKSTKELGDGTTNLRKMLVPESGMAE*IFDKHTLG |
Parental | HGD |
..D | |
Retrocopy | SND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 763 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 1743 .16 RPM |
SRP017611_liver | 0 .40 RPM | 782 .04 RPM |