RetrogeneDB ID: | retro_rnor_2163 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:102944293..102944839(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000045890 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fth1 | ||
Ensembl ID: | ENSRNOG00000022619 | ||
Aliases: | Fth1, Fth | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_036980] |
Percent Identity: | 92.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTTASP-SQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEK |
MTT.SP.SQV.QNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDV.LKNFAKYFLHQSHE.REHAEK | |
Retrocopy | MTTESP<SQVHQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVSLKNFAKYFLHQSHEKREHAEK |
Parental | LMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLE-KSVNQSLLELHKLATDKNDPHLCDFIETHY |
LMKLQNQRGGRIFLQDIKKPDRDDWESGLN.MECALHLE.KSVNQSLLELHKLATDKNDPHLC..IETHY | |
Retrocopy | LMKLQNQRGGRIFLQDIKKPDRDDWESGLNVMECALHLE>KSVNQSLLELHKLATDKNDPHLCGLIETHY |
Parental | LNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGHGDES |
LNEQVK.IKELGDHVTNLRKMGAPESGMAEYLF..H.LGH.DES | |
Retrocopy | LNEQVKCIKELGDHVTNLRKMGAPESGMAEYLFEEHILGHSDES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 763 .83 RPM |
SRP017611_kidney | 0 .28 RPM | 1743 .16 RPM |
SRP017611_liver | 0 .07 RPM | 782 .04 RPM |