RetrogeneDB ID: | retro_pcap_374 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_53670:8409..8695(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPCAG00000010377 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 52.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FPSQVRQNYSQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQ |
F.SQV..NY.QDS.A.I..QI.LEL..S...LSMSYY.D.DD..LKNFAKYFLHQSHE...HAEKLMKL. | |
Retrocopy | FFSQVHRNYNQDSTATIHCQISLEL*TSDIFLSMSYYSDLDDATLKNFAKYFLHQSHEDWKHAEKLMKL* |
Parental | NQRGGRIFLNDIK-KPDRDDW-ESGLNA |
.QRGG..F...IK..P..DDW.E.GLNA | |
Retrocopy | KQRGGEVFHHGIK<EPGLDDW<EMGLNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |