RetrogeneDB ID: | retro_pcap_62 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3625:8261..8574(-) | ||
Located in intron of: | ENSPCAG00000006023 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPCAG00000010377 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 57.69 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MTTTFPSQVRQNY-SQDSEAAI-NRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAE |
MTT..P..V..NY..QD.EA.......NLELY.SY...S..YY.D..D.A.KNFAK.FL..SH.ER.HA. | |
Retrocopy | MTTATPALVLHNY*NQDLEATA<HHPVNLELYTSYIHPSVCYYSDFSDTAVKNFAKCFLQKSH-ERGHAQ |
Parental | KLMKLQNQRGGRIFLNDIKKPDRDDWESG-LNAMECAL |
..MKLQNQ.GG.IFL..IKK.D.DD...G.LNA..C.L | |
Retrocopy | TFMKLQNQQGG*IFL*VIKKSDHDDQ*AG<LNAAQCTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |