RetrogeneDB - Parental gene ENSMMUG00000014888 details

							
>ENSMMUG00000014888
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCATGACGATGAGGTGACCGTCACGGAGGATAA

GATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAACCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAATG

TCAACATTGGGAGCCTCATCTGCAATGTAGGGGCTGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT

GCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAATCTGATGATGA

CATGGGCTTTGGTCTTTTTGACTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	145 .65 RPM
SRP007412_brain	19 .61 RPM
SRP007412_cerebellum	17 .18 RPM
SRP007412_heart	62 .60 RPM
SRP007412_kidney	48 .36 RPM
SRP007412_liver	203 .82 RPM
SRP007412_testis	23 .82 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000018320	ortholog_one2many	4 retrogenes	retro_btau_1131, retro_btau_1717, retro_btau_186, retro_btau_615,
Callithrix jacchus	ENSCJAG00000032919	ortholog_one2many	19 retrogenes	retro_cjac_1125, retro_cjac_1150, retro_cjac_1222, retro_cjac_1375, retro_cjac_1413, retro_cjac_1666, retro_cjac_1809, retro_cjac_183, retro_cjac_2090, retro_cjac_2626, retro_cjac_267, retro_cjac_2765, retro_cjac_306, retro_cjac_3131, retro_cjac_458, retro_cjac_469, retro_cjac_694, retro_cjac_750, retro_cjac_984,
Equus caballus	ENSECAG00000008542	possible_ortholog	4 retrogenes	retro_ecab_380, retro_ecab_677, retro_ecab_820, retro_ecab_958,
Latimeria chalumnae	ENSLACG00000012630	ortholog_many2many	1 retrogene	retro_lcha_7,
Macropus eugenii	ENSMEUG00000015277	possible_ortholog	6 retrogenes	retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Myotis lucifugus	ENSMLUG00000010542	possible_ortholog	33 retrogenes	retro_mluc_10, retro_mluc_1064, retro_mluc_1122, retro_mluc_1234, retro_mluc_136, retro_mluc_1374, retro_mluc_1412, retro_mluc_1424, retro_mluc_1654, retro_mluc_1670, retro_mluc_1751, retro_mluc_1810, retro_mluc_1832, retro_mluc_1850, retro_mluc_1944, retro_mluc_197, retro_mluc_2025, retro_mluc_2255, retro_mluc_2265, retro_mluc_2294, retro_mluc_2489, retro_mluc_2578, retro_mluc_433, retro_mluc_472, retro_mluc_570, retro_mluc_577, retro_mluc_61, retro_mluc_732, retro_mluc_791, retro_mluc_858, retro_mluc_916, retro_mluc_945, retro_mluc_95,
Monodelphis domestica	ENSMODG00000009209	possible_ortholog	1 retrogene	retro_mdom_1022,
Mustela putorius furo	ENSMPUG00000000204	ortholog_one2many	13 retrogenes	retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mus musculus	ENSMUSG00000007892	possible_ortholog	6 retrogenes	retro_mmus_180, retro_mmus_206, retro_mmus_2060, retro_mmus_2180, retro_mmus_247, retro_mmus_2525,
Oryctolagus cuniculus	ENSOCUG00000015087	possible_ortholog	8 retrogenes	retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Otolemur garnettii	ENSOGAG00000029641	ortholog_one2many	19 retrogenes	retro_ogar_1078, retro_ogar_1259, retro_ogar_1363, retro_ogar_1430, retro_ogar_1670, retro_ogar_2215, retro_ogar_2413, retro_ogar_2603, retro_ogar_2683, retro_ogar_2942, retro_ogar_3053, retro_ogar_3222, retro_ogar_3393, retro_ogar_363, retro_ogar_474, retro_ogar_500, retro_ogar_574, retro_ogar_607, retro_ogar_961,
Ochotona princeps	ENSOPRG00000001163	possible_ortholog	11 retrogenes	retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Procavia capensis	ENSPCAG00000014595	ortholog_one2many	7 retrogenes	retro_pcap_107, retro_pcap_118, retro_pcap_124, retro_pcap_315, retro_pcap_32, retro_pcap_36, retro_pcap_83,
Pan troglodytes	ENSPTRG00000007228	ortholog_one2one	1 retrogene	retro_ptro_96,
Rattus norvegicus	ENSRNOG00000011955	possible_ortholog	6 retrogenes	retro_rnor_1042, retro_rnor_1402, retro_rnor_1827, retro_rnor_2175, retro_rnor_2678, retro_rnor_493,
Rattus norvegicus	ENSRNOG00000013874	possible_ortholog	3 retrogenes	retro_rnor_2432, retro_rnor_2700, retro_rnor_2934,
Sarcophilus harrisii	ENSSHAG00000014818	possible_ortholog	6 retrogenes	retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Ictidomys tridecemlineatus	ENSSTOG00000027893	ortholog_one2many	8 retrogenes	retro_itri_1589, retro_itri_1698, retro_itri_1842, retro_itri_1856, retro_itri_226, retro_itri_409, retro_itri_796, retro_itri_976,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_60	91.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmul_111	98.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmul_257	98.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmul_260	95.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmul_461	86.96	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmul_2194	71.26	75.44	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmul_2282	65.05	86.84	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000014888 retrocopies

Parental gene:	MMU.17960, ENSMMUG00000014888
Aliases:	None
Description:	60S acidic ribosomal protein P1 [Source:RefSeq peptide;Acc:NP_001180503]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	7:48101021..48103464(+)

Parental gene:

MMU.17960, ENSMMUG00000014888