RetrogeneDB ID: | retro_itri_271 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:24044451..24045049(-) | ||
Located in intron of: | ENSSTOG00000016055 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 81.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MEGAEEKKKKVPAVP-ETLKKKRRNYAELKVKRLRKKFAQKMLRKARRKLIYEK-AKHYHKEYRQMYRTE |
ME.......K.PAVP.ETL.K...N..EL.VK.LRKKFAQKML.KARRKLIYEK.AKHYHKEYRQ.YR.E | |
Retrocopy | MEVLXXXXXKAPAVPAETL*KQQKNFTELNVKHLRKKFAQKMLQKARRKLIYEK<AKHYHKEYRQIYRME |
Parental | I-RMARMARK-AGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRL-RQIFNGTFVKLNKASINMLRI |
I..M.RMARK.AGNF.VPAE.KLAFVI.I.GIN..SPKV.KVLQLL.L...IF.GTFVKLNK..INMLRI | |
Retrocopy | I>QMTRMARK<AGNFHVPAESKLAFVIGITGINHLSPKVCKVLQLLHL<LLIFIGTFVKLNKGLINMLRI |
Parental | VEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFK |
.EP...WGYPNLKSVNELIYK.GYG...K.........L.A.SLGKY.IIC.E.LIH.IYTVGK.FK | |
Retrocopy | MEPNVTWGYPNLKSVNELIYKCGYG---KNQ*ETXXXTLTAQSLGKYSIICKEYLIHKIYTVGKQFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |