RetrogeneDB ID: | retro_itri_351 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393285.1:19688781..19689343(-) | ||
Located in intron of: | ENSSTOG00000020478 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 70.62 % |
Parental protein coverage: | 76.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MEGAEEKKKKVPAVPETL-KKKRRNYAELKVKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEI |
MEGA.EKKKKVPAVPETL.KKK.RNY.ELK.K.LRK...........RK.IYEKAK.YHK.YR.MY.TEI | |
Retrocopy | MEGAKEKKKKVPAVPETL<KKK*RNYTELKAKPLRKSLPKRCFER-QRKHIYEKAKNYHKQYRKMYKTEI |
Parental | RM-ARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP |
.M.A.MARK.GNFYVPAE.KLA.VI.IRGINGVSPKV.KVL.L.RL.QIFNG.F..LNK.SINMLR..EP | |
Retrocopy | QM>AGMARKSGNFYVPAETKLALVISIRGINGVSPKVQKVLKLFRLCQIFNGNFINLNKDSINMLRTMEP |
Parental | YIA-WGYPNLKSVNE-LIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDL |
Y....G.P..K..NE...YK.GYGKINKK.IALTDNALIA..L.KY.IICMEDL | |
Retrocopy | YTV<TGVPRPK-INE<MNYKHGYGKINKK*IALTDNALIAQYLSKYDIICMEDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |