RetrogeneDB ID: | retro_itri_542 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393300.1:4219124..4219531(+) | ||
Located in intron of: | ENSSTOG00000012850 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 58.99 % |
Parental protein coverage: | 54.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KKKVPAVPETLKKKRRNYAELKVKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK |
KKK.PA.PET.KK..........K...KKFA..ML.KARRKLIYE.AKH.H.EYRQ.YRT.I.MARMA.K | |
Retrocopy | KKKIPAMPETPKKSEGIWQNCR*KSSEKKFARNML*KARRKLIYEEAKHCHMEYRQTYRTQISMARMA*K |
Parental | AGNFY-VPAEP-KLAFVIRIRGINGVSP-KVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG |
A.NFY..P..P...AFVI.IR.I.GV.P.KV.K.L..L.L..IFNG.F.KLN...INMLRI....I..G | |
Retrocopy | ADNFY<LPEDP<IIAFVIQIRVIYGVYP>KVHKILYFLCLYWIFNGIFLKLNNGLINMLRIGHTHILYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |