RetrogeneDB ID: | retro_itri_1464 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393495.1:2809427..2809911(-) | ||
Located in intron of: | ENSSTOG00000007117 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 62.42 % |
Parental protein coverage: | 65.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GNFYVPAEPKLAFVIRIRGINGVSPKVRKV-LQLLRLRQIFNGTFVKLNK-ASINMLRIVEPYIAWGYPN |
G.FYVP.E.KLAFVIR.RGIN..SPK.....LQL..L....N.TFVKL...A..NML.I......WGY.N | |
Retrocopy | GKFYVPSECKLAFVIRTRGINDISPKTIRS<LQLC-LPHTLNITFVKLSR<ALVNMLWIT*TLTVWGYLN |
Parental | LKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSP |
LKS.NELI.K..YGKINKK.I..TDN.L...SL.KYGIICM..LI.EI.TV.K..K.A.NF.W.FKLSS. | |
Retrocopy | LKSMNELICKCRYGKINKKQITMTDNTLMD*SLHKYGIICMQNLIQEIHTVRKLLKGASNFFWSFKLSSS |
Parental | RGGMKKKTTHFVEGGDAGNREDQIN |
.G.MKK.TT.FVEGGDAGNR...IN | |
Retrocopy | QGRMKKMTTYFVEGGDAGNRKEPIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |