Parental gene:

RPL7, ENSSTOG00000004586

Aliases:None
Description:ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393458.1:2055739..2058574(-)


>ENSSTOG00000004586
ATGGAGGGTGCCGAAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAACTCTTAAGAAAAAGCGAAGGAATTATGCAGA
GCTGAAAGTAAAGCGCCTGAGGAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTAATCTATGAAAAAG
CCAAGCATTACCACAAGGAATATAGGCAAATGTACAGAACAGAGATTCGGATGGCTAGAATGGCAAGAAAAGCGGGCAAC
TTCTATGTACCTGCAGAACCCAAATTGGCATTTGTTATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGTTCGGAA
GGTGTTACAACTTCTTCGCCTTCGCCAGATCTTCAATGGCACCTTCGTTAAGCTCAACAAGGCTTCAATTAACATGCTGA
GGATCGTGGAACCTTACATTGCATGGGGGTACCCAAACCTGAAATCAGTGAATGAACTAATCTACAAGCGTGGATACGGC
AAAATCAATAAGAAACGAATTGCCTTGACAGATAACGCTTTGATTGCTCGATCTCTTGGTAAATATGGCATCATCTGCAT
GGAAGATCTGATTCATGAGATCTACACTGTTGGAAAACGCTTCAAAGAAGCAAATAACTTCCTGTGGCCTTTCAAATTGT
CTTCTCCGAGAGGTGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAAGACCAGATC
AACAGGCTTATTAGAAGGATGAACTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020139 ortholog_one2many 22 retrogenes
retro_btau_1088, retro_btau_1231, retro_btau_1367, retro_btau_1381, retro_btau_1422, retro_btau_1434, retro_btau_1468, retro_btau_1548, retro_btau_1559, retro_btau_1616, retro_btau_1627, retro_btau_1784, retro_btau_1814, retro_btau_304, retro_btau_426, retro_btau_622, retro_btau_668, retro_btau_730, retro_btau_750, retro_btau_758, retro_btau_863, retro_btau_879,
Callithrix jacchus ENSCJAG00000007686 ortholog_one2many 1 retrogene
retro_cjac_105,
Equus caballus ENSECAG00000009188 possible_ortholog 1 retrogene
retro_ecab_35,
Homo sapiens ENSG00000147604 ortholog_one2one 49 retrogenes
retro_hsap_1001, retro_hsap_1023, retro_hsap_1033, retro_hsap_1034, retro_hsap_1128, retro_hsap_113, retro_hsap_1232, retro_hsap_1281, retro_hsap_1614, retro_hsap_1626, retro_hsap_1844, retro_hsap_1862, retro_hsap_1957, retro_hsap_2008, retro_hsap_203, retro_hsap_2093, retro_hsap_2101, retro_hsap_2588, retro_hsap_2837, retro_hsap_3197, retro_hsap_3204, retro_hsap_3244, retro_hsap_3254, retro_hsap_3356, retro_hsap_3399, retro_hsap_344, retro_hsap_3453, retro_hsap_3493, retro_hsap_3560, retro_hsap_3573, retro_hsap_3625, retro_hsap_3717, retro_hsap_3775, retro_hsap_3883, retro_hsap_3918, retro_hsap_4137, retro_hsap_415, retro_hsap_426, retro_hsap_4306, retro_hsap_4662, retro_hsap_4704, retro_hsap_4718, retro_hsap_4761, retro_hsap_558, retro_hsap_616, retro_hsap_708, retro_hsap_729, retro_hsap_973, retro_hsap_976,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2one 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_one2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Microcebus murinus ENSMICG00000002880 ortholog_one2one 8 retrogenes
retro_mmur_1170, retro_mmur_1379, retro_mmur_139, retro_mmur_158, retro_mmur_52, retro_mmur_596, retro_mmur_646, retro_mmur_903,
Macaca mulatta ENSMMUG00000005141 ortholog_one2many 1 retrogene
retro_mmul_129,
Monodelphis domestica ENSMODG00000007136 ortholog_one2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Otolemur garnettii ENSOGAG00000003903 ortholog_one2many 2 retrogenes
retro_ogar_15, retro_ogar_225,
Pongo abelii ENSPPYG00000018671 ortholog_one2one 50 retrogenes
retro_pabe_1025, retro_pabe_1061, retro_pabe_1087, retro_pabe_1326, retro_pabe_1454, retro_pabe_1520, retro_pabe_1642, retro_pabe_1677, retro_pabe_1908, retro_pabe_1998, retro_pabe_2004, retro_pabe_2118, retro_pabe_2197, retro_pabe_2348, retro_pabe_2656, retro_pabe_2690, retro_pabe_2762, retro_pabe_2796, retro_pabe_2807, retro_pabe_2808, retro_pabe_2856, retro_pabe_2886, retro_pabe_2936, retro_pabe_2946, retro_pabe_307, retro_pabe_3085, retro_pabe_3117, retro_pabe_3139, retro_pabe_3191, retro_pabe_3414, retro_pabe_3468, retro_pabe_3506, retro_pabe_352, retro_pabe_3622, retro_pabe_3651, retro_pabe_3662, retro_pabe_3669, retro_pabe_3675, retro_pabe_436, retro_pabe_497, retro_pabe_514, retro_pabe_551, retro_pabe_628, retro_pabe_655, retro_pabe_826, retro_pabe_844, retro_pabe_859, retro_pabe_865, retro_pabe_867, retro_pabe_933,
Rattus norvegicus ENSRNOG00000006992 possible_ortholog 27 retrogenes
retro_rnor_1018, retro_rnor_1174, retro_rnor_1222, retro_rnor_1233, retro_rnor_1307, retro_rnor_1388, retro_rnor_1466, retro_rnor_1580, retro_rnor_1745, retro_rnor_1916, retro_rnor_1944, retro_rnor_2025, retro_rnor_2028, retro_rnor_2100, retro_rnor_2247, retro_rnor_2304, retro_rnor_2347, retro_rnor_2531, retro_rnor_2715, retro_rnor_2765, retro_rnor_2814, retro_rnor_2824, retro_rnor_530, retro_rnor_666, retro_rnor_911, retro_rnor_929, retro_rnor_977,
Ictidomys tridecemlineatus ENSSTOG00000009841 within_species_paralog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tupaia belangeri ENSTBEG00000002301 possible_ortholog 1 retrogene
retro_tbel_2042,
Tarsius syrichta ENSTSYG00000006100 ortholog_one2one 25 retrogenes
retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,
Tursiops truncatus ENSTTRG00000009074 ortholog_one2one 16 retrogenes
retro_ttru_1241, retro_ttru_1546, retro_ttru_1690, retro_ttru_174, retro_ttru_1776, retro_ttru_1918, retro_ttru_210, retro_ttru_290, retro_ttru_367, retro_ttru_402, retro_ttru_534, retro_ttru_604, retro_ttru_726, retro_ttru_852, retro_ttru_933, retro_ttru_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_271 69.57 81.45
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2. retro_itri_346 67.97 51.21
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3. retro_itri_349 55.88 66.94
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4. retro_itri_351 70.62 76.61
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5. retro_itri_390 63.43 52.42
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6. retro_itri_534 96.77 100.00
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7. retro_itri_542 58.99 54.84
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8. retro_itri_827 73.99 88.31
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9. retro_itri_917 73.33 53.23
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10. retro_itri_1025 68.75 51.21
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11. retro_itri_1080 66.91 54.03
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12. retro_itri_1358 79.49 78.23
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13. retro_itri_1375 76.80 100.00
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14. retro_itri_1412 76.52 97.98
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15. retro_itri_1430 90.70 68.95
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16. retro_itri_1464 62.42 65.73
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17. retro_itri_1593 97.59 100.00
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18. retro_itri_1776 76.60 75.00
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Download FASTA sequences of all ENSSTOG00000004586 retrocopies