RetrogeneDB ID: | retro_itri_534 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393299.1:2964219..2964963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 96.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEGAEEKKKKVPAVPETLKKKRRNYAELKVKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGAEEKKKKVPAVPETLKKKRRNYAELKVK.LRKKFAQKMLRKA.RKLIYEKAKHYHKEYRQMYRTEIR | |
Retrocopy | MEGAEEKKKKVPAVPETLKKKRRNYAELKVKCLRKKFAQKMLRKAKRKLIYEKAKHYHKEYRQMYRTEIR |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MARMAR..GNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI | |
Retrocopy | MARMAR*VGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
AWGYPNLKSVNELIYKRGYGKINKK.IALTDNALIA.SLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP | |
Retrocopy | AWGYPNLKSVNELIYKRGYGKINKKGIALTDNALIAQSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
Parental | FKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
.KLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRR.N | |
Retrocopy | LKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |