RetrogeneDB ID: | retro_itri_827 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393330.1:1439717..1440361(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 73.99 % |
Parental protein coverage: | 88.31 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | KVKRLRKKFAQKMLRKARR-KLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRG |
KVK.L.KKFAQ....K....KLIYEKA....KE.RQMYR.EI.M.R..R..GNFYVPAEPKLA.VIRI.. | |
Retrocopy | KVKEL-KKFAQNLIQKSYY>KLIYEKA----KEHRQMYRVEI*MVRVTRSYGNFYVPAEPKLALVIRIND |
Parental | INGVSPKVRKVLQLLRLRQIFNGTF-VKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKR |
INGVSPKV..VLQLL.LRQIFNGTF..KLNK.SINMLRIVE.Y.AWGYPNLK.V..LIYKRGYGKINKK. | |
Retrocopy | INGVSPKVH*VLQLLYLRQIFNGTF>LKLNKTSINMLRIVESYAAWGYPNLKLVTALIYKRGYGKINKKQ |
Parental | IALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANN-FLWPFKLSSPRGGMKKKTTHFVEGGDAGN |
IAL..NALIA.SLGKY.II..EDLIHEIY.V...FKEANN..L.PFK.SS...GMKKKTTHFVEGG.AG. | |
Retrocopy | IALAENALIA*SLGKYSII*REDLIHEIYIVRRCFKEANN<LLCPFK*SSLGHGMKKKTTHFVEGGNAGH |
Parental | R-EDQINRLIRRM |
R.EDQI.RLIRRM | |
Retrocopy | R>EDQIHRLIRRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |