RetrogeneDB ID: | retro_itri_1375 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393464.1:2735450..2736192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 76.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MEGAEEKKKKVPAVPETLKKKRRNYAELKVKRLRKKFAQKMLRKARRKL-IYEKAKHYHKEYR-QMYRTE |
MEGA.EKKKKVPAVP.TLKKK.RNYAELKVK.L.KK...K...K.......YEKAKHYHKEYR.QMYR.E | |
Retrocopy | MEGAKEKKKKVPAVPNTLKKK*RNYAELKVKCLGKKYGHKTALKGKEEAYLYEKAKHYHKEYR>QMYRME |
Parental | IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP |
.....MARK.GNFYVPAE.KLAFVI..RGINGVSPKV.K.LQLL.LRQIFNGTF.KLNKASINMLRIVEP | |
Retrocopy | V*ITKMARKTGNFYVPAELKLAFVIKVRGINGVSPKVCKMLQLLCLRQIFNGTFIKLNKASINMLRIVEP |
Parental | YIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFL |
YIAW.YPNLKSVNELIYK.GYGK.NKK.IAL.DNAL...S.GKYGI.CMEDLIHEIYTV.K.FKEANN.. | |
Retrocopy | YIAWRYPNLKSVNELIYKYGYGKNNKKQIALIDNALMIGSHGKYGIACMEDLIHEIYTVKKCFKEANNTM |
Parental | WPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
....L..PRGGMKKKTTHFV.G.DAGNREDQI.R.IR.MN | |
Retrocopy | --ALLNLPRGGMKKKTTHFVKGRDAGNREDQIDRHIRKMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |