RetrogeneDB ID: | retro_itri_1358 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393455.1:2194878..2195456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSSTOG00000004586 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 79.49 % |
Parental protein coverage: | 78.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK |
KHY.KE.RQMYRTEI.MAR.ARKAGN..VPAEPKLAFVIRIRGIN.VSPKV.KVL..L.L.QIFNGTFV. | |
Retrocopy | KHYYKECRQMYRTEI*MARIARKAGNICVPAEPKLAFVIRIRGINDVSPKVHKVLEFLHLFQIFNGTFVM |
Parental | LNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEI |
LNK.S.NMLRI.EP.I.WGYPNLKSVNELIYK..YGKINKK.IALT.N..IA.SLGKY.IICMED.I.EI | |
Retrocopy | LNKTSVNMLRIIEPCITWGYPNLKSVNELIYKCAYGKINKKQIALTHNT*IAQSLGKYEIICMEDPIQEI |
Parental | YTVGKRFKEANNFLWPFKLSSP-RGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
YTVGK.FKEANNFL.PFKLSSP..GGM.KKTT.F.E..DA.NREDQI.RLIRR.N | |
Retrocopy | YTVGKGFKEANNFL*PFKLSSP<KGGM-KKTTIFLEDQDASNREDQIDRLIRRKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |