RetrogeneDB ID: | retro_etel_1125 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_215485:872..1138(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSETEG00000003715 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 80. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGV-RAVRPKVLMRLSK |
.VQ.LTY..RLSYNTASNK.RLSRTPGNRIVYL.TKKVGK.PKSACGVCP.RL.GV.RAVR..V.M.LSK | |
Retrocopy | VVQSLTYWCRLSYNTASNKGRLSRTPGNRIVYLSTKKVGKTPKSACGVCPDRL*GV<RAVRCEVPMKLSK |
Parental | TKKHVSRAYGGSMCAKCVRD |
TK.HVSRA.GGSMCA.CV.D | |
Retrocopy | TKQHVSRASGGSMCAQCV*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |