RetrogeneDB ID: | retro_etel_1187 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_224583:8064..8280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSETEG00000003715 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 77.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSK---TKKHVSR |
RLSYN.AS.KT.LS.TPGNR.VYLY.KKVGKA.KSAC..CP..L.GV...RPKVLMRLSK...T.KHVSR | |
Retrocopy | RLSYNKASSKTGLSLTPGNRVVYLYIKKVGKATKSACSMCPS*L*GVCTTRPKVLMRLSKIKQTRKHVSR |
Parental | AY |
.Y | |
Retrocopy | VY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |