RetrogeneDB ID: | retro_etel_1890 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_311941:52495..52765(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSETEG00000003715 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 62.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKV-GKAPKSACGVCPGRLRGVRAVRPKVLMRLSK |
MVQRLTY..RLS...ASNK..LS..P.NR.V...TKK..GKAPKSACG.CPG...G..AVRP.V.M.LSK | |
Retrocopy | MVQRLTYQHRLSCKAASNKSMLS*SPSNRTVSVFTKKAAGKAPKSACGTCPG*C*GAPAVRPEVFMTLSK |
Parental | TKKHVSRAYGGSMCAKCVRD |
TK.....AYG.S.CAKC..D | |
Retrocopy | TKQNCQQAYGCSLCAKCAWD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |