RetrogeneDB ID: | retro_etel_124 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2307:6715..6984(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSETEG00000003715 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 87.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVQRLTYRRRLS-YNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSK |
MVQ.LTY.RR.S..NTASNKTRLSRTPGNRIVYLYTK.VGKAPKSACGVCPGRLRGV.AVR.KVLMRLSK | |
Retrocopy | MVQVLTYQRRAS>DNTASNKTRLSRTPGNRIVYLYTKIVGKAPKSACGVCPGRLRGVHAVRSKVLMRLSK |
Parental | T-KKHVSRAYGGSMCAKCVRD |
T.KKH.SRAYGGSMCAKCV.D | |
Retrocopy | T>KKHGSRAYGGSMCAKCV*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |