Parental gene:

LDHA, ENSAMEG00000017854

Aliases:None
Description:lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193388.1:118037..126787(+)


>ENSAMEG00000017854
AGTGCGCATGAGCCGAGCTTTTTGCACGTCCTACGGCGACTGGGTCGTTTCAGGAGGCAGTTACAGGAGCTTTTTGCACG
TTCCTCTGATCCTTACGAAGCTACACTTACACCCAAACGTCAATATTATTTTTCCACGCCAAGTTCTAAGTCCAAAATGG
CAACTCTGAAAGATCAGCTGATTCAGAATCTTCTTAAGGAAGAACATACCCCCCAGAATAAGATTACAGTTGTTGGGGTT
GGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCATTGA
AGACAAACTGAAGGGAGAGATGATGGATCTCCAGCACGGCAGCCTTTTCCTTAGAACACCAAAAATTGTCTCTGGCAAAG
ATTATAATGTGACAGCAAACTCCAAGCTGGTTATTATCACAGCTGGGGCACGTCAGCAAGAGGGAGAAAGTCGTCTTAAT
TTGGTCCAACGTAATGTGAACATCTTTAAGTTCATCATTCCTAATATCGTAAAATACAGCCCAAACTGCAAGTTGCTGGT
TGTTTCCAGTCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGTGTTATTGGAAGTG
GTTGCAATCTGGATTCAGCCCGGTTCCATTACCTAATGGGGGAAAGGCTGGGAGTTCACCCGTTAAGCTGTCACGGGTGG
GTCCTTGGGGAGCATGGAGACTCCAGTGTGCCTGTATGGAGTGGAGTGAACGTTGCTGGTGTGTCTCTGAAGAATCTGCA
CCCTGACTTAGGCACTGATGCAGATAAGGAGCAGTGGAAACAGGTTCACAAACAGGTGGTTGACAGTGCCTATGAGGTGA
TCAAACTGAAAGGCTACACTTCCTGGGCCATTGGACTGTCCGTGGCAGATTTGGCAGAAAGTATGATGAAGAATCTTAGG
CGGGTGCATCCAATTTCCACCCTGGTTAAGGGTCTCTATGGAATAAAAGATGATGTCTTCCTTAGTGTTCCTTGCATCTT
GGGACAGAATGGAATTTCAGATGTCGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCTGTTTGAAGAAGAGTGCAGATA
CGCTTTGGGAGATCCAAAAGGAGCTGCAGTTTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 within_species_paralog 4 retrogenes
Bos taurus ENSBTAG00000008683 ortholog_one2one 2 retrogenes
Choloepus hoffmanni ENSCHOG00000009977 ortholog_one2one 14 retrogenes
Callithrix jacchus ENSCJAG00000007094 ortholog_one2many 1 retrogene
Cavia porcellus ENSCPOG00000011926 ortholog_one2one 2 retrogenes
Dasypus novemcinctus ENSDNOG00000018915 ortholog_one2one 11 retrogenes
Equus caballus ENSECAG00000020669 ortholog_one2one 5 retrogenes
Echinops telfairi ENSETEG00000007508 ortholog_one2one 15 retrogenes
Homo sapiens ENSG00000134333 ortholog_one2one 5 retrogenes
Gorilla gorilla ENSGGOG00000010350 ortholog_one2many 3 retrogenes
Loxodonta africana ENSLAFG00000011307 ortholog_one2many 1 retrogene
Macropus eugenii ENSMEUG00000001462 ortholog_one2one 91 retrogenes
retro_meug_101, retro_meug_1029, retro_meug_103, retro_meug_1082, retro_meug_1088, retro_meug_1105, retro_meug_1140, retro_meug_1162, retro_meug_1189, retro_meug_1190, retro_meug_1260, retro_meug_1288, retro_meug_1295, retro_meug_1301, retro_meug_1323, retro_meug_1329, retro_meug_1332, retro_meug_1356, retro_meug_1368, retro_meug_1376, retro_meug_1400, retro_meug_1402, retro_meug_1404, retro_meug_1417, retro_meug_1419, retro_meug_1420, retro_meug_1422, retro_meug_1484, retro_meug_1535, retro_meug_155, retro_meug_1556, retro_meug_1620, retro_meug_1632, retro_meug_1652, retro_meug_1674, retro_meug_1685, retro_meug_1720, retro_meug_1721, retro_meug_1747, retro_meug_1749, retro_meug_1765, retro_meug_1779, retro_meug_1781, retro_meug_181, retro_meug_1824, retro_meug_1875, retro_meug_1898, retro_meug_1906, retro_meug_1915, retro_meug_1927, retro_meug_1945, retro_meug_1977, retro_meug_200, retro_meug_2000, retro_meug_2022, retro_meug_2067, retro_meug_2107, retro_meug_2126, retro_meug_2137, retro_meug_2139, retro_meug_2168, retro_meug_226, retro_meug_244, retro_meug_291, retro_meug_336, retro_meug_351, retro_meug_436, retro_meug_448, retro_meug_477, retro_meug_532, retro_meug_572, retro_meug_590, retro_meug_591, retro_meug_626, retro_meug_634, retro_meug_638, retro_meug_639, retro_meug_660, retro_meug_68, retro_meug_736, retro_meug_737, retro_meug_832, retro_meug_861, retro_meug_867, retro_meug_870, retro_meug_891, retro_meug_916, retro_meug_927, retro_meug_971, retro_meug_980, retro_meug_981,
Macaca mulatta ENSMMUG00000031024 ortholog_one2one 2 retrogenes
Monodelphis domestica ENSMODG00000006522 ortholog_one2many 2 retrogenes
Mus musculus ENSMUSG00000063229 ortholog_one2one 14 retrogenes
Nomascus leucogenys ENSNLEG00000017767 ortholog_one2one 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000015939 ortholog_one2many 6 retrogenes
Pongo abelii ENSPPYG00000003437 ortholog_one2one 5 retrogenes
Pan troglodytes ENSPTRG00000003421 ortholog_one2one 5 retrogenes
Rattus norvegicus ENSRNOG00000013009 ortholog_one2many 17 retrogenes
Sorex araneus ENSSARG00000001224 ortholog_one2one 1 retrogene
Sarcophilus harrisii ENSSHAG00000015776 ortholog_one2one 1 retrogene
Sus scrofa ENSSSCG00000013366 ortholog_one2one 1 retrogene
Tarsius syrichta ENSTSYG00000008062 possible_ortholog 4 retrogenes
Tursiops truncatus ENSTTRG00000013756 ortholog_one2one 2 retrogenes
Vicugna pacos ENSVPAG00000010215 ortholog_one2one 5 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_389 71.47 86.72
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2. retro_amel_462 93.47 87.50
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Download FASTA sequences of all ENSAMEG00000017854 retrocopies