RetrogeneDB ID: | retro_pabe_3117 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:9125570..9125963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 82.09 % |
Parental protein coverage: | 53.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQ-KMLRKARRKLIYEKA-KHYHKEYRQMYRTEI |
MEGV..KKKVPAVPETLKKKRRNFAELKIK.LR.KFAQ.K.LR.ARRKL..EK..KHYHK.YR.M.RTEI | |
Retrocopy | MEGVK-KKKVPAVPETLKKKRRNFAELKIKHLRNKFAQ<KVLREARRKLR*EKS>KHYHKDYRRMDRTEI |
Parental | RMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINML |
.MA.M.RKA.NFYVPAEPKLA.VIRI..INGVSPKVRKVLQLL.L.QIFNGTFVKL.KASINML | |
Retrocopy | QMAKMTRKASNFYVPAEPKLALVIRISSINGVSPKVRKVLQLLHLPQIFNGTFVKLYKASINML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .12 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .21 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3883 |