Parental gene:

RPL7, ENSPPYG00000018671

Aliases:None
Description:60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4]
Organism:Orangutan (Pongo abelii)
Coordinates:8:75769139..75772849(-)


>ENSPPYG00000018671
ATGGAGGGTGTAGAAGAAAAGAAGAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGAGCT
GAAGATCAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTGCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAA
AGCACTATCACAAGGAATATAGGCAGATGTACAGAACTGAAATTCGAATGGCGAGGATGGCAAGAAAAGCTGGCAACTTC
TATGTACCTGCAGAACCCAAATTGGCGTTTGTCATCAGAATCAGAGGTATCAATGGCGTGAGCCCAAAGGTTCGAAAGGT
GTTGCAGCTTCTTCGCCTTCGTCAAATCTTCAATGGAACCTTTGTGAAGCTCAACAAGGCTTCGATTAACATGCTGAGGA
TTGTAGAGCCATATATTGCATGGGGGTACCCCAATCTGAAGTCAGTAAATGAACTAATCTACAAGCGTGGTTATGGCAAA
ATCAATAAGAAGCGAATTGCTTTGACAGATAATGCTTTGATTGCTCGATCTCTTGGTAAATACGGCATCATCTGCATGGA
GGATCTGATTCATGAGATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTT
CTCCACGAGGTGGAATGAAGAAAAAGACGACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAGGACCAGATCAAC
AGGCTTATTAGAAGAATGAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 195 .23 RPM
SRP007412_cerebellum 236 .51 RPM
SRP007412_heart 246 .64 RPM
SRP007412_kidney 458 .95 RPM
SRP007412_liver 335 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020139 ortholog_one2many 22 retrogenes
retro_btau_1088, retro_btau_1231, retro_btau_1367, retro_btau_1381, retro_btau_1422, retro_btau_1434, retro_btau_1468, retro_btau_1548, retro_btau_1559, retro_btau_1616, retro_btau_1627, retro_btau_1784, retro_btau_1814, retro_btau_304, retro_btau_426, retro_btau_622, retro_btau_668, retro_btau_730, retro_btau_750, retro_btau_758, retro_btau_863, retro_btau_879,
Callithrix jacchus ENSCJAG00000007686 possible_ortholog 1 retrogene
retro_cjac_105,
Equus caballus ENSECAG00000009188 possible_ortholog 1 retrogene
retro_ecab_35,
Homo sapiens ENSG00000147604 ortholog_one2one 49 retrogenes
retro_hsap_1001, retro_hsap_1023, retro_hsap_1033, retro_hsap_1034, retro_hsap_1128, retro_hsap_113, retro_hsap_1232, retro_hsap_1281, retro_hsap_1614, retro_hsap_1626, retro_hsap_1844, retro_hsap_1862, retro_hsap_1957, retro_hsap_2008, retro_hsap_203, retro_hsap_2093, retro_hsap_2101, retro_hsap_2588, retro_hsap_2837, retro_hsap_3197, retro_hsap_3204, retro_hsap_3244, retro_hsap_3254, retro_hsap_3356, retro_hsap_3399, retro_hsap_344, retro_hsap_3453, retro_hsap_3493, retro_hsap_3560, retro_hsap_3573, retro_hsap_3625, retro_hsap_3717, retro_hsap_3775, retro_hsap_3883, retro_hsap_3918, retro_hsap_4137, retro_hsap_415, retro_hsap_426, retro_hsap_4306, retro_hsap_4662, retro_hsap_4704, retro_hsap_4718, retro_hsap_4761, retro_hsap_558, retro_hsap_616, retro_hsap_708, retro_hsap_729, retro_hsap_973, retro_hsap_976,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Microcebus murinus ENSMICG00000002880 ortholog_one2one 8 retrogenes
retro_mmur_1170, retro_mmur_1379, retro_mmur_139, retro_mmur_158, retro_mmur_52, retro_mmur_596, retro_mmur_646, retro_mmur_903,
Macaca mulatta ENSMMUG00000005141 ortholog_one2many 1 retrogene
retro_mmul_129,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Otolemur garnettii ENSOGAG00000003903 ortholog_one2many 2 retrogenes
retro_ogar_15, retro_ogar_225,
Pongo abelii ENSPPYG00000016619 within_species_paralog 21 retrogenes
retro_pabe_1064, retro_pabe_1069, retro_pabe_1315, retro_pabe_1341, retro_pabe_1370, retro_pabe_1379, retro_pabe_1457, retro_pabe_2078, retro_pabe_2154, retro_pabe_2354, retro_pabe_2527, retro_pabe_2543, retro_pabe_2598, retro_pabe_2609, retro_pabe_2644, retro_pabe_2988, retro_pabe_3053, retro_pabe_3259, retro_pabe_3410, retro_pabe_3714, retro_pabe_3753,
Rattus norvegicus ENSRNOG00000006992 possible_ortholog 27 retrogenes
retro_rnor_1018, retro_rnor_1174, retro_rnor_1222, retro_rnor_1233, retro_rnor_1307, retro_rnor_1388, retro_rnor_1466, retro_rnor_1580, retro_rnor_1745, retro_rnor_1916, retro_rnor_1944, retro_rnor_2025, retro_rnor_2028, retro_rnor_2100, retro_rnor_2247, retro_rnor_2304, retro_rnor_2347, retro_rnor_2531, retro_rnor_2715, retro_rnor_2765, retro_rnor_2814, retro_rnor_2824, retro_rnor_530, retro_rnor_666, retro_rnor_911, retro_rnor_929, retro_rnor_977,
Ictidomys tridecemlineatus ENSSTOG00000004586 ortholog_one2one 18 retrogenes
retro_itri_1025, retro_itri_1080, retro_itri_1358, retro_itri_1375, retro_itri_1412, retro_itri_1430, retro_itri_1464, retro_itri_1593, retro_itri_1776, retro_itri_271, retro_itri_346, retro_itri_349, retro_itri_351, retro_itri_390, retro_itri_534, retro_itri_542, retro_itri_827, retro_itri_917,
Tupaia belangeri ENSTBEG00000002301 possible_ortholog 1 retrogene
retro_tbel_2042,
Tarsius syrichta ENSTSYG00000006100 ortholog_one2one 25 retrogenes
retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,
Tursiops truncatus ENSTTRG00000009074 ortholog_one2one 16 retrogenes
retro_ttru_1241, retro_ttru_1546, retro_ttru_1690, retro_ttru_174, retro_ttru_1776, retro_ttru_1918, retro_ttru_210, retro_ttru_290, retro_ttru_367, retro_ttru_402, retro_ttru_534, retro_ttru_604, retro_ttru_726, retro_ttru_852, retro_ttru_933, retro_ttru_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_307 86.75 100.00
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2. retro_pabe_352 84.68 100.00
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3. retro_pabe_436 75.85 93.12
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4. retro_pabe_497 88.84 90.69
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5. retro_pabe_514 77.92 60.73
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6. retro_pabe_551 82.97 91.90
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7. retro_pabe_628 74.07 53.85
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8. retro_pabe_655 78.40 85.02
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9. retro_pabe_826 92.00 100.00
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10. retro_pabe_844 72.78 62.75
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11. retro_pabe_859 68.22 51.01
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12. retro_pabe_865 78.95 61.13
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13. retro_pabe_867 83.27 98.79
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14. retro_pabe_933 82.47 78.14
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15. retro_pabe_1025 76.88 80.16
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16. retro_pabe_1061 87.15 100.00
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17. retro_pabe_1087 87.50 96.76
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18. retro_pabe_1326 82.23 97.98
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19. retro_pabe_1454 88.76 100.00
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20. retro_pabe_1520 76.58 63.97
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21. retro_pabe_1642 78.45 72.87
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22. retro_pabe_1677 79.87 61.54
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23. retro_pabe_1908 87.20 100.00
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24. retro_pabe_1998 88.31 100.00
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25. retro_pabe_2004 87.83 92.31
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26. retro_pabe_2118 72.55 60.32
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27. retro_pabe_2197 95.16 50.20
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28. retro_pabe_2348 82.00 100.00
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29. retro_pabe_2656 86.61 90.28
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30. retro_pabe_2690 81.77 75.30
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31. retro_pabe_2762 79.21 79.76
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32. retro_pabe_2796 86.53 98.79
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33. retro_pabe_2807 81.01 62.75
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34. retro_pabe_2808 77.45 81.78
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35. retro_pabe_2856 87.55 100.00
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36. retro_pabe_2886 79.04 91.90
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37. retro_pabe_2936 90.36 100.00
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38. retro_pabe_2946 80.42 96.76
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39. retro_pabe_3085 93.98 53.44
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40. retro_pabe_3117 82.09 53.44
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41. retro_pabe_3139 74.90 98.38
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42. retro_pabe_3191 79.53 69.23
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43. retro_pabe_3414 76.34 53.04
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44. retro_pabe_3468 81.97 94.33
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45. retro_pabe_3506 84.50 52.23
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46. retro_pabe_3622 86.80 100.00
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47. retro_pabe_3651 76.31 100.00
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48. retro_pabe_3662 80.72 100.00
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49. retro_pabe_3669 75.56 53.85
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50. retro_pabe_3675 61.19 53.85
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Download FASTA sequences of all ENSPPYG00000018671 retrocopies