RetrogeneDB ID: | retro_pabe_2118 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:52976987..52977439(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 72.55 % |
Parental protein coverage: | 60.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL |
GVSPKVRKVL.LL.L.QIF.GTF.KLNKAS.N.L.IVEPYIAWGYPNLKSVNELI......K.......L | |
Retrocopy | GVSPKVRKVLHLLHLHQIFSGTFMKLNKASFNILKIVEPYIAWGYPNLKSVNELISRMVIAKSVRSKF-L |
Parental | TDNALIARSLGKYGIICMEDLIHEIYTVGKRFK-EANNFLWPFKLSSPRGGM---KKKTTHFVEGGDAGN |
....LIARSLGKYGII.MEDLIHEIYTVGK.FK.EANNFLWPFKLSSP.GGM......T...VE..D.GN | |
Retrocopy | SLVTLIARSLGKYGIIFMEDLIHEIYTVGKCFK<EANNFLWPFKLSSP*GGMXXXXXXTAYLVESDDPGN |
Parental | REDQINRLIRRMN |
RE.QINRLIRRMN | |
Retrocopy | REEQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |