RetrogeneDB ID: | retro_pabe_3085 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:104712641..104713040(+) | ||
Located in intron of: | ENSPPYG00000017910 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 93.98 % |
Parental protein coverage: | 53.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEGVE-EKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
M.GVE..KKKVPAVPETLKKKRRNF.ELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQ.YRTEIR | |
Retrocopy | MVGVE*KKKKVPAVPETLKKKRRNFSELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQTYRTEIR |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINML |
MARMARKAGN.YVPAEPKLAFVIRIRGING.SPKVRKVLQLLRLRQIFNGTFVKLNKAS.NML | |
Retrocopy | MARMARKAGNYYVPAEPKLAFVIRIRGINGMSPKVRKVLQLLRLRQIFNGTFVKLNKASMNML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .66 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .61 RPM | 236 .51 RPM |
SRP007412_heart | 1 .32 RPM | 246 .64 RPM |
SRP007412_kidney | 1 .92 RPM | 458 .95 RPM |
SRP007412_liver | 2 .02 RPM | 335 .15 RPM |