RetrogeneDB ID: | retro_pabe_2856 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:34619233..34619969(+) | ||
Located in intron of: | ENSPPYG00000016519 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 87.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRM |
MEGVEEKK.VPAVPETLKKKRRNFAEL.I.RLRKKFAQKML.KARRKLIYEKAKHYHKEYRQM.RTEI.M | |
Retrocopy | MEGVEEKK-VPAVPETLKKKRRNFAELQINRLRKKFAQKML*KARRKLIYEKAKHYHKEYRQMHRTEIQM |
Parental | ARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIA |
ARMARKA.NFYVPAE.KLAF.IRIRGINGV.PKV.KVLQLL.L.QIFNGTFVKLNKASIN.L.IVEPYIA | |
Retrocopy | ARMARKASNFYVPAELKLAFIIRIRGINGVNPKV*KVLQLLCLHQIFNGTFVKLNKASINVLWIVEPYIA |
Parental | WGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLI-HEIYTVGKRFKEANNFLWP |
..YPNLKSVNELIYK.GYGKINKK.IALTDN.LIAR.LGKYGI.CMEDLI.HEIYTVGK.FKEANNFLWP | |
Retrocopy | *KYPNLKSVNELIYKHGYGKINKK*IALTDNTLIARPLGKYGITCMEDLI<HEIYTVGKCFKEANNFLWP |
Parental | FKLSSPRGGMKK-KTTHFVEGGDAGNREDQINRLIRRMN |
FKLSS...GMKK.KTTHFVEGGD.GNR.DQIN.LIRRMN | |
Retrocopy | FKLSSA*SGMKK<KTTHFVEGGDGGNRVDQINTLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .03 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3453 |