RetrogeneDB ID: | retro_pabe_3191 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:142424194..142424704(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 79.53 % |
Parental protein coverage: | 69.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL |
A...Y......LAFVI.IRGINGVSPKV.KVLQ.LRLRQIFNGT.VK.NKASINMLRIVEP.IAWG.PNL | |
Retrocopy | ATSMYLQNPNSLAFVIKIRGINGVSPKVQKVLQILRLRQIFNGTCVKINKASINMLRIVEPLIAWGNPNL |
Parental | KSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPR |
KSVNELIYK.GYGKINKK.IALTD.ALIA.SLGKYGIICMEDLIHEIYTVGK.FKEANNFLWP.KLS.P. | |
Retrocopy | KSVNELIYKGGYGKINKK-IALTDHALIAPSLGKYGIICMEDLIHEIYTVGKCFKEANNFLWPLKLSFP* |
Parental | GGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
G..K....HF.E.GDAG.REDQINRLIR.M. | |
Retrocopy | GRIKETAIHFAERGDAGKREDQINRLIRIMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .03 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |