RetrogeneDB ID: | retro_pabe_3651 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:70967043..70967780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 76.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRM |
MEGVEEK.KV.AVPE..KKK.RNF.ELKIKRLRK...QKML.KARRKLI.EKAK.YHK.YRQM.RTEI.M | |
Retrocopy | MEGVEEKNKVLAVPESFKKKGRNFTELKIKRLRK-VSQKMLLKARRKLIHEKAKNYHK*YRQMHRTEI*M |
Parental | ARMARKAGNFYVPAEPKLA-FVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
ARMARKAGN.Y.PAEPKLA..VIRIRGINGVSPKV.K..Q.L.L..IFNG.FVKLN.ASINML.IVEPYI | |
Retrocopy | ARMARKAGNLYQPAEPKLA>LVIRIRGINGVSPKVQKLFQFLPLCRIFNGNFVKLNRASINMLKIVEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
A.GYPNLKSVN.LIYK.GYGKI.KKRIALT.N.LIA.SLGKY.IICM.DLIHEIYT..K.FKEAN.F.W. | |
Retrocopy | A*GYPNLKSVNKLIYKCGYGKITKKRIALTNNTLIAWSLGKYSIICMADLIHEIYTLRKCFKEANDFFWS |
Parental | FKLSSPRGGMKKKTTHFVEGGD-AGNREDQINRLIRRMN |
FKL.S..GGMKKKT.HFVE.GD.....E...NR.IR.MN | |
Retrocopy | FKLFSL*GGMKKKTIHFVESGD>TNRKEEN-NRPIRWMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4704 |