RetrogeneDB ID: | retro_pabe_551 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:98034132..98034815(+) | ||
Located in intron of: | ENSPPYG00000002550 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 82.97 % |
Parental protein coverage: | 91.9 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MEGVEEKKK-VPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
M.GVEEKKK.VPAVPET..KK.RNF.ELKIK.LRKKFAQ.ML.KA.RKLIYEKAKHYH.EYRQMYRTEI. | |
Retrocopy | MDGVEEKKKKVPAVPETPRKK*RNFTELKIKHLRKKFAQRMLQKAKRKLIYEKAKHYH*EYRQMYRTEI* |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG-TFVKLNKASINMLRIVEPY |
MARMARKAGNF.VP.EPKLAFVIRIRGI.GVSPKV.K..QLL.L.Q.FN..TF.KLNKA.I.ML..VEPY | |
Retrocopy | MARMARKAGNFNVPSEPKLAFVIRIRGIDGVSPKVQKMFQLLCLHQVFNE<TFAKLNKAPITMLWTVEPY |
Parental | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
IAWGYPNL.SVNELIYKRGYGKI.KK.IALTDN.LIA.SL.KYGIICMEDLIHEIYT.GK.FKEANNFLW | |
Retrocopy | IAWGYPNLMSVNELIYKRGYGKISKKQIALTDNPLIA*SLDKYGIICMEDLIHEIYTIGKCFKEANNFLW |
Parental | PFKLSSPRGGMKKKTTHFV |
PFK.SSP.GGMKKKTTHF. | |
Retrocopy | PFKVSSPQGGMKKKTTHFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .03 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_616 |