RetrogeneDB ID: | retro_pabe_2004 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:73537141..73537827(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 87.83 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGVEEKKK-VPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
ME.VEEKKK.VPA.PETLKKK.RNFAELKIK.L.KKFAQKMLRKARRKLIYEKAKHYHK.YRQMYRTEI. | |
Retrocopy | MEDVEEKKKKVPAMPETLKKKGRNFAELKIKCL*KKFAQKMLRKARRKLIYEKAKHYHKAYRQMYRTEI* |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
M.RMARKAG.FYVP.EPKLAFVIRIRG..GVSPKVRKVLQLLRL..IFNGTFVKLNKASINMLRIVEPYI | |
Retrocopy | MVRMARKAGDFYVPEEPKLAFVIRIRGVSGVSPKVRKVLQLLRLHRIFNGTFVKLNKASINMLRIVEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
AWGYPNLKSVNELIYKRGYGKI.KKRIALTDN..IA.SLGKYG..CMEDLIHE.YTVGK..K.ANNFLWP | |
Retrocopy | AWGYPNLKSVNELIYKRGYGKISKKRIALTDNTSIAQSLGKYGVVCMEDLIHESYTVGKCLKKANNFLWP |
Parental | FKLSSPRGGMKK-KTTHFVE |
FKLSSP.GGMKK.K.THFVE | |
Retrocopy | FKLSSP*GGMKK<KATHFVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .09 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .06 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2093 |