RetrogeneDB ID: | retro_pabe_3468 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:46920763..46921462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 81.97 % |
Parental protein coverage: | 94.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPA |
..LKK..RNFAELKIK.LRKKFAQKM..KA.RKLIYEK.KH.HKEYRQMYRTEIRM.RMARKAGN.YVPA | |
Retrocopy | QKLKKRQRNFAELKIKCLRKKFAQKMF*KAKRKLIYEKVKHNHKEYRQMYRTEIRMVRMARKAGNVYVPA |
Parental | EPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIY |
EPKL.FVIR.RGING.S.KVRKVLQLL...QIFNGTFVKLNKAS.N.L.IVEPY.AWGYPNLKSVNE.IY | |
Retrocopy | EPKLVFVIRFRGINGASTKVRKVLQLLCRHQIFNGTFVKLNKASTNVLWIVEPYVAWGYPNLKSVNEVIY |
Parental | KRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTT |
..GYGKI.KK.IALTDNALI...LGKYG.IC.EDLIHE.YTVGK.FKEAN.FLWPFKLSSPR.GMKK.T. | |
Retrocopy | QHGYGKISKKQIALTDNALIGQCLGKYGTICLEDLIHETYTVGKCFKEANSFLWPFKLSSPRSGMKKLTI |
Parental | HFVEGGDAGNREDQINRLIRRMN |
.FVEGGDAGN.EDQINRL.RRMN | |
Retrocopy | YFVEGGDAGNMEDQINRLLRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .03 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4137 |